PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g084880.2.1
Common NameLOC101267471
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 352aa    MW: 39733.1 Da    PI: 6.3441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g084880.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.65.9e-052572961155
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ ++++ L +l+ +      +K + a++L++A+ YI+ Lq
  Solyc02g084880.2.1 257 VRKEKLGDRISALHRLVAPF-----GKTDTASVLTEAIGYIQFLQ 296
                         57778889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.71E-6244299No hitNo description
PROSITE profilePS5088811.947246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-7256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-10256308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDSTNLYNHH QLQQLAGYPF FSTGVSTLHD WNSGITSEEE YYYKLGHMKR ISSEELMWKR  60
GIDTFPLMNT SMFHDGHHES SNDPLDDKNN KAGYIISNDY FLKMKDMNSL SNNMFKESYF  120
ENEQQHAFDL NENLLSEDSY MNNANNSSYV SSHDMEYSDF QGLKLAFNGL TFKNSHDSNS  180
NCFGHFTTER MSSGFADGLQ ELTHSPSSKK ITSNVRKNIG VSSKAKRSAE DEANPCQEAS  240
KKSRVTSQSP STLMLKVRKE KLGDRISALH RLVAPFGKTD TASVLTEAIG YIQFLQDQIL  300
TLSMPYSKST ERKLHHINLK DSSIEAVLDL ESRGLCLVPT SFSSYISQSC D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g084880.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232434.20.0transcription factor bHLH110-like
TrEMBLA0A3Q7F7860.0A0A3Q7F786_SOLLC; Uncharacterized protein
STRINGSolyc02g084880.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134431213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-30bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]