PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g087310.2.1

Common Name

LOC101264581

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

E2F/DP

Protein Properties

Length: 375aa MW: 42155.4 Da PI: 9.0499

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g087310.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	76	3.7e-24	20	86	1	71
E2F_TDP 1 rkeksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++flkl+ ++ ++ l+++a++L v +rRRiYDi+N+Le+++++++k+kn++rw+g Solyc02g087310.2.1 20 RKDKSLGLLCSNFLKLCDREGVdSTIGLDNAADQL---GV--ERRRIYDIVNILESVGVLSRKAKNQYRWNG 86 79***************9888********.....****************************98 PP
2	E2F_TDP	70.8	1.5e-22	143	222	1	70
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 rkeksL +l+q+f+kl+++s+ + ++l+++a++L+ + +k+k RR+YDi+NV+ ++nliek + k+ +rw+ Solyc02g087310.2.1 143 RKEKSLMILAQNFVKLFHCSDVDLISLDKAASALLGDvhdpmAMKTKTRRLYDIANVFVSMNLIEKirspdNGKPVFRWI 222 79****************************************************************99999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	9.0E-25	18	88	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.7E-14	19	84	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	1.1E-27	20	86	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Pfam	PF02319	6.0E-21	21	86	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.3E-19	140	223	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	3.3E-23	143	223	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Pfam	PF02319	1.5E-17	144	222	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	2.64E-11	145	222	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MSSSLHTEDS QWKNPSIYSR KDKSLGLLCS NFLKLCDREG VDSTIGLDNA ADQLGVERRR 60 IYDIVNILES VGVLSRKAKN QYRWNGYNAI SKAVDLLKKE GLKDLSTVSS TCHNVSNVIA 120 CNNSDVKEKG EGKTAGSHKI DNRKEKSLMI LAQNFVKLFH CSDVDLISLD KAASALLGDV 180 HDPMAMKTKT RRLYDIANVF VSMNLIEKIR SPDNGKPVFR WIAWKENLRS GSLASAKSDD 240 STRRTFGAEI TNTTPKRYRD DSSSDVMSNG QVKRLKVAKD DELKDKKQEI STEQLNERGT 300 KDFVFGPFGP SSLPRSGISG KENLKQIQNW EDLASKYHPQ YQNKAANELF AHYVEAWESW 360 QVEAANELHK QHEH*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MSSSLHTEDS QWKNPSIYSR KDKSLGLLCS NFLKLCDREG VDSTIGLDNA ADQLGVERRR  60
IYDIVNILES VGVLSRKAKN QYRWNGYNAI SKAVDLLKKE GLKDLSTVSS TCHNVSNVIA  120
CNNSDVKEKG EGKTAGSHKI DNRKEKSLMI LAQNFVKLFH CSDVDLISLD KAASALLGDV  180
HDPMAMKTKT RRLYDIANVF VSMNLIEKIR SPDNGKPVFR WIAWKENLRS GSLASAKSDD  240
STRRTFGAEI TNTTPKRYRD DSSSDVMSNG QVKRLKVAKD DELKDKKQEI STEQLNERGT  300
KDFVFGPFGP SSLPRSGISG KENLKQIQNW EDLASKYHPQ YQNKAANELF AHYVEAWESW  360
QVEAANELHK QHEH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4yo2_A	9e-34	19	209	3	222	Transcription factor E2F8
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.25224	0.0	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g087310.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215413	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232256.1	0.0	E2F transcription factor-like E2FF isoform X1
TrEMBL	A0A3Q7FAN7	0.0	A0A3Q7FAN7_SOLLC; Uncharacterized protein
STRING	Solyc02g087310.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2522	24	57
Representative plant	OGRP2474	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01330.1	6e-93	DP-E2F-like protein 3

Link Out ? help Back to Top
Phytozome	Solyc02g087310.2.1
Entrez Gene	101264581

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]