PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g087570.1.1

Common Name

LOC104646007

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 124aa MW: 14475.6 Da PI: 9.0346

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g087570.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.4	7.5e-41	5	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk++rrkC++dCvlapyfpa+qpkkf+n+h+lFG++n++k+l++l++e+ ++dam+s+++e+++ra+ PvyG+v+ i+ l+qql+ + Solyc02g087570.1.1 5 SCAACKYQRRKCTSDCVLAPYFPANQPKKFQNAHRLFGVRNIVKILQELKDEDqKSDAMKSIIFESDMRAKFPVYGCVECISYLRQQLQIS 95 6**********************************************666549******************************** PP DUF260 91 kaelallkee 100 +el+ ++++ Solyc02g087570.1.1 96 LQELQDVRSQ 105 **999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.877	4	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.2E-39	5	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MSRVSCAACK YQRRKCTSDC VLAPYFPANQ PKKFQNAHRL FGVRNIVKIL QELKDEDQKS 60 DAMKSIIFES DMRAKFPVYG CVECISYLRQ QLQISLQELQ DVRSQLEFYR QQHPTATYPN 120 FDR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-30	2	109	8	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-30	2	109	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g087570.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015163531.1	1e-83	PREDICTED: LOB domain-containing protein 27
Swissprot	Q9STS6	5e-38	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A3Q7FWE7	2e-86	A0A3Q7FWE7_SOLLC; Uncharacterized protein
STRING	Solyc02g087570.1.1	4e-87	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-40	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	Solyc02g087570.1.1
Entrez Gene	104646007

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]