PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g089020.1.1

Common Name

TCP5

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 285aa MW: 31895.3 Da PI: 7.1599

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g089020.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.4	6.5e-31	45	170	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak +i+el+ + Solyc02g089020.1.1 45 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKNEIDELPPLqippgslnpnlypmlgnapqittnkeg 135 689*************************************************************555555555555555433333333333 PP TCP 66 .......ssssaseceaesssssasnsssg.........................k 89 + + Solyc02g089020.1.1 136 rinwdnnI---------------------PleppnnnalgynpnffkwdpsnlslA 170 32222220.....................144444444445455555544333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	31.353	47	105	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.0E-27	47	110	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MITREEKGNV VNDDGNKSKA CTTSTSTTSW TRLKDPRIVR VSRAFGGKDR HSKVCTVRGL 60 RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLDAAKN EIDELPPLQI PPGSLNPNLY 120 PMLGNAPQIT TNKEGRINWD NNIPLEPPNN NALGYNPNFF KWDPSNLSLA HSENSLSHQH 180 DHHQNFNLMS SMPLTSHHQP VVYPPGLPQF FHQHNNNINV GASSSSEFDP KEINFQMLSN 240 NSGSENPLST STNSFRHSID STNQSIRPFH FLPSQNCDDT EPSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-19	52	106	1	55	Putative transcription factor PCF6
5zkt_B	3e-19	52	106	1	55	Putative transcription factor PCF6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.13533	0.0	flower\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g089020.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
BioGRID	Solyc02g089020.1, Solyc02g089830.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ496323	0.0	Solanum lycopersicum TCP transcription factor 5 (TCP5) mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001233792.1	0.0	TCP transcription factor 5
TrEMBL	G3BGU5	0.0	G3BGU5_SOLLC; TCP transcription factor 5
STRING	Solyc02g089020.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99
Representative plant	OGRP180	15	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08070.1	2e-46	TCP domain protein 17

Link Out ? help Back to Top
Phytozome	Solyc02g089020.1.1
Entrez Gene	100736516

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Parapunova V, et al. Identification, cloning and characterization of the tomato TCP transcription factor family. BMC Plant Biol., 2014. 14: p. 157 [PMID:24903607]