PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g089830.1.1
Common NameTCP7
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 242aa    MW: 27338.7 Da    PI: 10.22
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g089830.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.83.9e-38631832132
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 
                          +kkdrh ki T++g RdRRvRls+ +a++fFdLqd+LG+dk+skt++WL++++k ai +l ++ s++++     s +++  n+++++++ 
  Solyc02g089830.1.1  63 QVKKDRHTKILTSQGHRDRRVRLSIGVARKFFDLQDMLGYDKPSKTLDWLFTKSKLAIEDLINDVSKKSTPL---SIHNN--NNNNNSECD 148
                         589*************************************************************66666333...22222..223334555 PP

                 TCP  93 saakskksqksaasalnlakesrakarararertrekmri 132
                         +++    ++k ++      ++srakarararert +k  +
  Solyc02g089830.1.1 149 EDMIVPLAKKAKQ-----ERDSRAKARARARERTIKKIWT 183
                         5554444333333.....679*************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-3564148IPR005333Transcription factor, TCP
PROSITE profilePS5136933.32765123IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.497163180IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MFPFGNSSNG GNPILHSSFL NNQILLHQHD LPTHHHYLAA ANGHSIDSYA TNNVAINNKS  60
KKQVKKDRHT KILTSQGHRD RRVRLSIGVA RKFFDLQDML GYDKPSKTLD WLFTKSKLAI  120
EDLINDVSKK STPLSIHNNN NNNNSECDED MIVPLAKKAK QERDSRAKAR ARARERTIKK  180
IWTQIAPNRE ATASHYNNST RNWNHDDVNP TIMSSMDAST ICCTSLPIVQ KAWDSYHGSQ  240
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g089830.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDSolyc02g089830.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963250.0Solanum lycopersicum TCP transcription factor 7 (TCP7) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233797.10.0transcription factor TCP7
TrEMBLG3BGU71e-180G3BGU7_SOLLC; TCP transcription factor 7
STRINGSolyc02g089830.1.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.27e-29TCP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Yang X, et al.
    Evolution of double positive autoregulatory feedback loops in CYCLOIDEA2 clade genes is associated with the origin of floral zygomorphy.
    Plant Cell, 2012. 24(5): p. 1834-47
    [PMID:22649271]
  3. Parapunova V, et al.
    Identification, cloning and characterization of the tomato TCP transcription factor family.
    BMC Plant Biol., 2014. 14: p. 157
    [PMID:24903607]