PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g090310.1.1

Common Name

LOC101253547

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 261aa MW: 28593.9 Da PI: 8.625

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g090310.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	3.9e-39	46	104	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ Solyc02g090310.1.1 46 SENLRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSI 104 57899***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.6E-33	48	103	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-25	49	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.394	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MIQELFAGNT TLIGDDNISN ITPSSSPISC TTSNSNIAPA SANANSENLR CPRCDSPNTK 60 FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGCRK NKSIATSKST AAKFKNSLPF 120 EFIGKSGIFG GFEQEIIPSN YDNNNPFLFS SPHQNHNPIL SLLKGNLHKS IGVNQFPSNN 180 GIWKNNYEEN VGEVQNSRGF QELYQRLKAS TNRCYTDNMH GPSSSSMILD SAPVTGGELG 240 CWNPTLSTWL DLPTANGAYL *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.14024	0.0	flower\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g090310.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226517	0.0	Solanum lycopersicum chromosome 2 clone C02SLe0056J19, complete sequence
GenBank	AC232774	0.0	Solanum lycopersicum chromosome 2 clone C02SLe0056J10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232062.1	0.0	dof zinc finger protein DOF1.7
TrEMBL	A0A3Q7FC59	0.0	A0A3Q7FC59_SOLLC; Uncharacterized protein
STRING	Solyc02g090310.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-34	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Solyc02g090310.1.1
Entrez Gene	101253547

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]