PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g090950.1.1

Common Name

LOC101250861

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 223aa MW: 24768.4 Da PI: 9.5174

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g090950.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.3e-08	126	166	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +Av+Y+k L Solyc02g090950.1.1 126 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 166 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.345	117	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-14	118	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-14	121	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-13	123	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-6	127	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.29E-6	140	171	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MDLQNIAHSL ELGFSNSNIE MIPLQSPLHN SNYLMNSPPS NFSFMGNPIE EPAAMPILSS 60 IDEIIASTHG NGNDYSCLQR RNSMEAMREM IFRIAMMQPI HIDPESVKPP KRKNVKISKD 120 PQSVAARHRR ERISERIRIL QRLVPGGTKM DTASMLDEAV HYVKFLKKQL QSLEQAAVNN 180 RPMISGFSTA MSSPGGPMNY NSSSIRACQP HQSMNSGAQM LS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.12426	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g090950.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215383	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0104A12, complete sequence
GenBank	AC215449	0.0	Solanum lycopersicum chromosome 2 clone C02SLe0022J22, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233628.1	1e-163	transcription factor HEC1
TrEMBL	A0A3Q7FC24	1e-161	A0A3Q7FC24_SOLLC; Uncharacterized protein
STRING	Solyc02g090950.1.1	1e-162	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA752	23	101
Representative plant	OGRP761	15	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50330.1	4e-44	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc02g090950.1.1
Entrez Gene	101250861

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]