PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g094170.2.1

Common Name

LOC101268333

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 255aa MW: 28802.5 Da PI: 9.0085

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g094170.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	96	118	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H Solyc02g094170.2.1 96 SCSVCSRVYPTSRLLSIHVSEaH 118 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.57	68	93	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	70	93	IPR007087	Zinc finger, C2H2
SMART	SM00355	5.4	95	118	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	97	118	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.45	133	158	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	135	158	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MAMEFDRQIE LGFPFWSPTR RRFGPDDPFF AYGNIQRELL AKQVALDLTE EENQLVQNSI 60 TDDEISNLFC PIIGCGAQMK NLDDFEDHYV TRHTASCSVC SRVYPTSRLL SIHVSEAHDS 120 FFQAKAARGF PMYECLVEGC DIKLKSYKSR QQHLVDKHKF PASYEFFRKA RPSKKQRLKP 180 HHKQASNKTQ EKSSAMQVEE ETIDNLVSAV SKLTTSDSPS AISFGRSRAR GLSFVPRAVN 240 RQRGPVTSTG GTKN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.2052	0.0	cell culture\| fruit\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g094170.2.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215418	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0204A09, complete sequence
GenBank	AC215457	0.0	Solanum lycopersicum chromosome 2 clone C02SLe0061K08, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004231779.1	0.0	zinc finger protein 511
TrEMBL	A0A3Q7FEC8	0.0	A0A3Q7FEC8_SOLLC; Uncharacterized protein
STRING	Solyc02g094170.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10211	20	22
Representative plant	OGRP7538	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-106	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Phytozome	Solyc02g094170.2.1
Entrez Gene	101268333

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]