PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g019710.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MIKC_MADS
Protein Properties Length: 178aa    MW: 20703.9 Da    PI: 10.4362
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g019710.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF916.1e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien++nrqvtfskRrng+lKKA+ELS+LCdaeva+++fs++gk y ++s
  Solyc03g019710.2.1  9 KRIENQTNRQVTFSKRRNGLLKKAYELSILCDAEVALLLFSPSGKAYHFAS 59
                        79**********************************************986 PP
2K-box584e-2081157985
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                         +  + +e ++++++ + + i++L+   +h+ Ge+L++L +keL+qLe+qL  ++++iRskK+++l+e+  +lqk+ k
  Solyc03g019710.2.1  81 QGPRAMEVWRTKIDDMTRTIHELEARDKHFAGEELSNLGMKELKQLERQLRVGVERIRSKKHKILHEENIHLQKQVK 157
                         55567899*****************9***********************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.604161IPR002100Transcription factor, MADS-box
CDDcd002651.96E-40278No hitNo description
SuperFamilySSF554558.11E-32280IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-31323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-313859IPR002100Transcription factor, MADS-box
PfamPF014867.3E-1685160IPR002487Transcription factor, K-box
PROSITE profilePS5129710.14986177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGRGKVELKR IENQTNRQVT FSKRRNGLLK KAYELSILCD AEVALLLFSP SGKAYHFASH  60
DIERTILRYK NEVGLSKNSD QGPRAMEVWR TKIDDMTRTI HELEARDKHF AGEELSNLGM  120
KELKQLERQL RVGVERIRSK KHKILHEENI HLQKQVKLYE VEGSSRILDT NPRMRII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-23169169Myocyte-specific enhancer factor 2B
1tqe_Q1e-23169169Myocyte-specific enhancer factor 2B
1tqe_R1e-23169169Myocyte-specific enhancer factor 2B
1tqe_S1e-23169169Myocyte-specific enhancer factor 2B
6c9l_A1e-23169169Myocyte-specific enhancer factor 2B
6c9l_B1e-23169169Myocyte-specific enhancer factor 2B
6c9l_C1e-23169169Myocyte-specific enhancer factor 2B
6c9l_D1e-23169169Myocyte-specific enhancer factor 2B
6c9l_E1e-23169169Myocyte-specific enhancer factor 2B
6c9l_F1e-23169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds (Ref.1). Expressed in endotesta cell layer of developing seeds (PubMed:28369525). {ECO:0000269|PubMed:28369525, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}.
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g019710.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX607600.0L.esculentum TDR8 mRNA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317531.11e-124MADS-box transcription factor TDR8 isoform X1
SwissprotA0A217EJJ02e-47AG11S_VITVI; Agamous-like MADS-box protein AGL11
SwissprotF6I4572e-47AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A3Q7FGU81e-119A0A3Q7FGU8_SOLLC; Uncharacterized protein
STRINGSolyc03g019710.2.11e-127(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.25e-48MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  5. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  6. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  7. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]