PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g033680.1.1
Common NameLOC101267013, SlEOT2
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SRS
Protein Properties Length: 117aa    MW: 12294.2 Da    PI: 4.0917
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g033680.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70248.62.8e-15135120154
              DUF702 120 vssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         +ss++++e+++aYq+av+i+Gh+fkGiLydqG ++
  Solyc03g033680.1.1   1 MSSIEENEDQIAYQAAVNINGHIFKGILYDQGDNH 35 
                         689*****************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.8E-12134IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016243.5E-16132IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MSSIEENEDQ IAYQAAVNIN GHIFKGILYD QGDNHEYNYM NGGDYDSSSG GDPVPRQYNL  60
NITRTATSAA NDVAVGGGGV ASAMAAEGSS HFLETSLYSS VNTFVAGTQF FPPSRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g033680.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001316391.11e-79transcription factor EXPRESSION OF TERPENOIDS 2
SwissprotK4B6C97e-23EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLA0A3Q7FFT44e-79A0A3Q7FFT4_SOLLC; Uncharacterized protein
TrEMBLU5L3632e-78U5L363_SOLLC; Expression of terpenoids 2
STRINGSolyc03g033680.1.16e-80(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1760044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-13SHI-related sequence 5
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    Expression of Terpenoids 1, a glandular trichome-specific transcription factor from tomato that activates the terpene synthase 5 promoter.
    Plant Mol. Biol., 2014. 84(3): p. 345-57
    [PMID:24142382]
  3. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]