PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g034260.1.1
Common NameLOC101252664
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21441 Da    PI: 6.2922
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g034260.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.62.2e-101660246
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                        +ien++   vtf +Rr  +   A+EL   Cd+++ +++fs++++ 
  Solyc03g034260.1.1 16 KIENQRVSDVTFFNRRSSLYRMANELVDFCDVDIGIVLFSPSNHP 60
                        79***************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.446767IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-5766IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-15981IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-6929IPR002100Transcription factor, MADS-box
PfamPF003192.1E-141663IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-62944IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-64465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDSKKTRVRQ TFPISKIENQ RVSDVTFFNR RSSLYRMANE LVDFCDVDIG IVLFSPSNHP  60
FSFFHPTSEA VIERFLNPDS QLSEKTRLDA EQARNKVNQL NNRLDAMEKR IEQIEEIEHA  120
QTLLQLSQTE ENGERSKWKS IDQLNANEIP TFEAWLRTTV SKMNYRLEKL ENEASSLKNA  180
RGTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g034260.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234621.11e-134agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7FG091e-133A0A3Q7FG09_SOLLC; Uncharacterized protein
STRINGSolyc03g034260.1.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-09AGAMOUS-like 29
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]