PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g042500.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 204aa    MW: 23352.1 Da    PI: 4.1267
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g042500.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84.1e-1314871699
                        EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        +v++k+++e+   +      + le ++g+ Wev++  ++++g+++l+kGW++F++   + ++  ++F+++ rs f  vv ++++
  Solyc03g042500.1.1 14 VVFSKRHCENKF-N-----PVFLEFPHGKAWEVEV--DNSQGQIWLAKGWSDFCDYYSISVKSLLMFTYNPRSHF--VVAIYDQ 87
                        456667773333.3.....299*************..********************************988888..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.687188IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-13995IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-13988IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-91586No hitNo description
PfamPF023621.0E-91587IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRHLGARPIL RILVVFSKRH CENKFNPVFL EFPHGKAWEV EVDNSQGQIW LAKGWSDFCD  60
YYSISVKSLL MFTYNPRSHF VVAIYDQSTT EIEYPIDQDI ESDEQEEDIL VSQGNANVID  120
EDILILQSNA YVIEEDIPIF QSNANVIKDE KEDIPVNCPQ TNANVFEQHK EVGEANNICE  180
KVVPNNYSSQ YILVDLTGDN PFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g042500.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384760.0Solanum lycopersicum chromosome 3 clone C03SLm0006J07, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234716.11e-117B3 domain-containing transcription factor VRN1-like
TrEMBLA0A3Q7FGM01e-116A0A3Q7FGM0_SOLLC; Uncharacterized protein
STRINGSolyc03g042500.1.11e-148(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-11B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]