PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g043810.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 125aa MW: 14389.7 Da PI: 10.8639

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g043810.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.2	8.7e-09	51	86	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 k+ rr ++NR++A+r R RK ++++ L++++k+Le Solyc03g043810.1.1 51 MKKLRRTISNRLSAQRARMRKIEYTDGLKKEAKNLE 86 6999*****************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57959	1.42E-8	51	94	No hit	No description
Pfam	PF00170	1.5E-7	51	86	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.2E-9	52	86	No hit	No description
PROSITE pattern	PS00036	0	55	70	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MNEKRNKSAE PNLSLSLKTP IEYESINNIP TLEEAVNLEL KNGQVDPNVN MKKLRRTISN 60 RLSAQRARMR KIEYTDGLKK EAKNLEIIFG EWRRIVSFGK GTVKDPPKPR QFHTKVFIVK 120 REAI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g043810.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009545	1e-42	Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0034F03, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015069614.2	8e-52	basic leucine zipper 34-like
TrEMBL	K4BG01	2e-84	K4BG01_SOLLC; Uncharacterized protein
STRING	Solyc03g043810.1.1	4e-85	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7615	19	29
Representative plant	OGRP13467	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07160.1	3e-07	bZIP family protein

Link Out ? help Back to Top
Phytozome	Solyc03g043810.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]