PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g043900.1.1

Common Name

LOC101263881

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 204aa MW: 23654.6 Da PI: 9.7924

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g043900.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.8	2.3e-13	86	144	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+++NRe+ArrsR RK+ +e+L++ + L+ eN++L ++++ ++ ++++ k ++ Solyc03g043900.1.1 86 RKRKRMISNRESARRSRMRKQTHLENLRNQSNRLKLENRDLTNRIQLITGHYQQIKRNN 144 5789***************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.7E-10	77	141	No hit	No description
SMART	SM00338	2.8E-12	82	146	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.496	84	147	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.24E-11	86	138	No hit	No description
Pfam	PF00170	4.6E-11	86	144	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.01E-18	87	138	No hit	No description
PROSITE pattern	PS00036	0	89	104	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MLSTILSSDG IFPNTFPSFY DDFTQWDCTE PTSTFPKQGV ELVFSPTQSP TPEPVISHDS 60 GSGFDKSKPD SPNDSPNSGT HDLAERKRKR MISNRESARR SRMRKQTHLE NLRNQSNRLK 120 LENRDLTNRI QLITGHYQQI KRNNEMLRAE SIFLQERLKG IRDLLITRQL QQQLYNSAFA 180 WPCNNLYVEQ RPHMINQPII NHQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	105	RRSRMRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g043900.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234711.1	1e-150	bZIP transcription factor 11-like
TrEMBL	A0A3Q7FJ80	1e-149	A0A3Q7FJ80_SOLLC; Uncharacterized protein
STRING	Solyc03g043900.1.1	1e-150	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2820	22	51
Representative plant	OGRP8744	8	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	2e-24	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	Solyc03g043900.1.1
Entrez Gene	101263881

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]