PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g059300.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 228aa    MW: 26569.4 Da    PI: 9.5083
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g059300.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.77.2e-1711263128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         +G+rFhPtd  l+ +yLk+  +g+    +e+ i  +diy    Pw++   ++ e k  yf ++ +k+  +++r +r+ ++g+Wk +  ++ 
  Solyc03g059300.1.1   1 MGIRFHPTDTKLI-NYLKRFFKGELSLNQECpILFADIYGDqPPWEIF-GANFEVKYRYFITPLKKRRIKDTRFSRTCAKGMWKGQTGEEL 89 
                         59***********.9*******99855546669999***87368***6.556678899**************************7666677 PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + ++  g +vg k+   f   +++ g++  W++ ey++
  Solyc03g059300.1.1  90 IRRNsLGPVVGFKRKCRFE-TSDQCGHNNIWLIIEYQV 126
                         766546778*********7.799999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.4761150IPR003441NAC domain
SuperFamilySSF1019411.44E-182150IPR003441NAC domain
PfamPF023655.9E-122126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGIRFHPTDT KLINYLKRFF KGELSLNQEC PILFADIYGD QPPWEIFGAN FEVKYRYFIT  60
PLKKRRIKDT RFSRTCAKGM WKGQTGEELI RRNSLGPVVG FKRKCRFETS DQCGHNNIWL  120
IIEYQVADSF FKKNNHIIKE DFVVCRIKKK KIMDKEKNVD HAIEAQDGDV AGIINPMLIE  180
PNHNNVYSTW KDLVGVFDEV EATTTKFESK YNGEERDSVA STRRQRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16267KKRRIK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g059300.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2469311e-148Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence
GenBankAC2469971e-148Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886113.11e-171NAC domain-containing protein 2-like
TrEMBLA0A3Q7FI471e-169A0A3Q7FI47_SOLLC; Uncharacterized protein
STRINGSolyc03g059300.1.11e-170(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.15e-14NAC domain containing protein 52
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]