PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g062750.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 123aa    MW: 14427.8 Da    PI: 10.5147
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g062750.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM583.2e-1851133109
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         +G+rFhPtd el+ +yLk+  +g+  l+ ++ i+ +diy    Pw++ ++ + +ek  yf ++ +k++ ++kr  r+ ++g+Wk +  +  
  Solyc03g062750.1.1   5 MGIRFHPTDTELI-NYLKRFFKGELcLNKQSPIQFADIYGDqPPWEIFEANSCKEKFRYFITPLRKRKMKDKRFCRTCAKGTWKGQTAEDL 94 
                         7************.9********995444455*******87368***64444466677**************************9999999 PP

                 NAM  92 vlsk.kgelvglkktLvfy 109
                         + ++  g +vg k+ + f 
  Solyc03g062750.1.1  95 IRRNgMGPVVGFKRNFRFE 113
                         9887566779*****9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.2283122IPR003441NAC domain
SuperFamilySSF1019415.49E-165113IPR003441NAC domain
PfamPF023651.1E-115115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MSKQMGIRFH PTDTELINYL KRFFKGELCL NKQSPIQFAD IYGDQPPWEI FEANSCKEKF  60
RYFITPLRKR KMKDKRFCRT CAKGTWKGQT AEDLIRRNGM GPVVGFKRNF RFETSVCGQN  120
KT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g062750.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2469311e-136Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence
GenBankAC2469971e-136Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067530.13e-83NAC domain containing protein 52-like
TrEMBLA0A3Q7FKZ93e-86A0A3Q7FKZ9_SOLLC; Uncharacterized protein
STRINGSolyc03g062750.1.14e-87(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.27e-11NAC domain containing protein 35
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]