PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g082750.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 179aa    MW: 20734.8 Da    PI: 10.1694
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g082750.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY43.65.8e-141321761659
                         TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  16 kgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         + +++ +sYY Ct   + p+k++ve+s++dp+ v++tY+g+Hnh+
  Solyc03g082750.1.1 132 RTNPTGKSYYSCTEVkNYPAKRHVEKSSKDPTKVIVTYRGQHNHP 176
                         678999*******9989***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.65117178IPR003657WRKY domain
SMARTSM007741.3E-6122177IPR003657WRKY domain
SuperFamilySSF1182901.96E-11124178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-12124177IPR003657WRKY domain
PfamPF031062.1E-9133176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTTLLLLITV FMAMATLLTQ VFFKKKERNC VGDFREAFAV EKKRYFGLDE VISLANNLNT  60
NSRIENRTET IPNTPLVIVE HEEEKKKARY SMQSSTTESG NLFIYRGKIQ ERHEILAEEL  120
SKVDHGRWRK RRTNPTGKSY YSCTEVKNYP AKRHVEKSSK DPTKVIVTYR GQHNHPLP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g082750.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010318118.11e-122uncharacterized protein LOC104646414
TrEMBLA0A3Q7FKH71e-130A0A3Q7FKH7_SOLLC; Uncharacterized protein
STRINGSolyc03g082750.1.11e-131(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-11WRKY family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]