PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g082810.1.1

Common Name

LOC101254769

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 220aa MW: 25054.7 Da PI: 7.0706

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g082810.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	74.7	1.1e-23	137	195	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYG K +s+f +sYYrC a +Cp+++++++s++dp+ v++tY+g+Hnh+ Solyc03g082810.1.1 137 ADQWRWRKYGMKRTGDSTFLKSYYRCNEAnDCPARRHIQKSSTDPNKVIVTYRGQHNHP 195 59***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-23	131	196	IPR003657	WRKY domain
PROSITE profile	PS50811	22.504	131	197	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-20	135	196	IPR003657	WRKY domain
SMART	SM00774	4.4E-22	136	196	IPR003657	WRKY domain
Pfam	PF03106	7.4E-20	138	195	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MAENENDWDL WAVVRSCGKR NNSVHDDMNV NNTSVLEDPT HVTDRVGDFT GLEHRHYFGL 60 DEIISLSNNL NTTNSKIENQ TETIPNTPLV VVEHEEKKKK KVRFSMQISS TEAGNTFSYR 120 GKSTERYEIL AEKLSEADQW RWRKYGMKRT GDSTFLKSYY RCNEANDCPA RRHIQKSSTD 180 PNKVIVTYRG QHNHPHIAMV HGSPNAAAPL EEPSFPSST*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g082810.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004235113.1	1e-166	WRKY transcription factor 22-like
TrEMBL	A0A3Q7FMU1	1e-165	A0A3Q7FMU1_SOLLC; Uncharacterized protein
STRING	Solyc03g082810.1.1	1e-165	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11091	13	23
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	6e-17	WRKY DNA-binding protein 14

Link Out ? help Back to Top
Phytozome	Solyc03g082810.1.1
Entrez Gene	101254769

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]