PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g083040.1.1

Common Name

LOC101253567

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 265aa MW: 31049.2 Da PI: 5.8826

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g083040.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.6	1.9e-26	151	200	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++le++++yF+ pi++AAkeL v+lTvLK++CR+++I+RWPhRk+ksl Solyc03g083040.1.1 151 DTLELEEIQRYFHVPITKAAKELRVGLTVLKKRCRELNIMRWPHRKLKSL 200 789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.632	134	222	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-23	152	200	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDVKSQVLDV LKMENQNDHF DWLYSEQEYP PSTFGTLQQD SRLSNGGLLN FEFDPFELPN 60 DLQNNNLPYF GLEEFEEICQ DLGSFDLKSL PSQFQEDNNT LIIHDANVNV MPQNVTHDTL 120 GESQVTTPAF YGDSMEIIQN RNNNRRHKKS DTLELEEIQR YFHVPITKAA KELRVGLTVL 180 KKRCRELNIM RWPHRKLKSL QTLIHNVKEM GLTSEVEMLE EHQRMVERVP EMELTDRTKK 240 LRQTCFKANY KKRRASMAMT ANFY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g083040.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010318117.1	0.0	protein RKD3
TrEMBL	K4BI80	0.0	K4BI80_SOLLC; Uncharacterized protein
STRING	Solyc03g083040.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12143	19	22
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-44	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Solyc03g083040.1.1
Entrez Gene	101253567

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]