PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g083340.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 561aa    MW: 63603 Da    PI: 7.2328
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g083340.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.71.4e-19191239554
             G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                         +Wt++LH++F++av+qL G+ +  Pk+il++m++++Lt+ +v+SHLQk R
  Solyc03g083340.1.1 191 EWTKDLHAAFMQAVSQL-GEGRCYPKEILQAMNLPDLTRMQVASHLQKCR 239
                         7****************.9*****************************98 PP
2Response_reg39.23.7e-14141191107
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         v+++d ++ + + ++++l+ +gy +v ++d+ ++a+ +l + +  +D+i+l +++++++ ++ll + ++ +  +  ++v ++ +e  a++ 
  Solyc03g083340.1.1  14 VMLIDNDKEFVNEMTSCLQAHGY-RVITVDTTSSAMSMLSKGKqkIDVIILNVRLSNSSFVDLLAQAEALN--IISLAVCDEFNEFVAKKT 101
                         89*********************.***************666666************99888887655544..666667788889****** PP

                         HHTTESEEEESS--HHHH CS
        Response_reg  90 lkaGakdflsKpfdpeel 107
                         l+ Ga  +l Kpf++e l
  Solyc03g083340.1.1 102 LDDGAYLYLKKPFNKEIL 119
                         *************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004480.003312123IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.57E-1412134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.5E-1512146No hitNo description
PROSITE profilePS5011020.47113127IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.2E-914119IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.37E-915127No hitNo description
SuperFamilySSF466891.7E-14185240IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-19187240IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-17190240IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MASPYHGMNG EISVMLIDND KEFVNEMTSC LQAHGYRVIT VDTTSSAMSM LSKGKQKIDV  60
IILNVRLSNS SFVDLLAQAE ALNIISLAVC DEFNEFVAKK TLDDGAYLYL KKPFNKEILI  120
YLWQFVLAER KRKEKASEGS RKHKDQMKVN MIKNKESEEN IGKYTLKRKK GTKGMQNNAI  180
DKVVTRKDYK EWTKDLHAAF MQAVSQLGEG RCYPKEILQA MNLPDLTRMQ VASHLQKCRR  240
NNWRSPEERK NIRRRSTKRR TVTFEEPKSN FRKFGVMPSP QANVPNQQWN PFPTHNTNNI  300
FTQRESSIQR QQLYRPQFQV QPHYLSIDNS FLFSQTNNGE NHSGKNYNSN LNVAQGATPI  360
MPATYIQNAI INNYNLNVNN VTTYSSRGMM PNAYVGNVTI NGMGATNANA SSQQYVGEPI  420
MNGPRNIDVA PYENYVEGSN SNKKENRDVY LNFNNMDSLF QNLGPSSANL PSELDTEFDQ  480
VYSDDQDLGP PNANLPNAQG NELDQVYSNI QNLETPSANL PNEQGSQFGQ VYSDEQNRGS  540
LSANLPNEQD NEFDQVYSDD *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134RKRKEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g083340.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886090.10.0putative two-component response regulator ARR13
TrEMBLA0A3Q7FN390.0A0A3Q7FN39_SOLLC; Uncharacterized protein
STRINGSolyc03g083340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-25response regulator 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]