PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g095270.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 239aa MW: 27491.2 Da PI: 7.5367

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g095270.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	16	38	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+++F+++ L H+ +H Solyc03g095270.1.1 16 YRCRFCNEVFTTSQGLAGHQTKH 38 9*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.0E-5	13	43	No hit	No description
SMART	SM00355	0.0079	16	38	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.575	16	43	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	18	38	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MIYPSLLTRP AGSWCYRCRF CNEVFTTSQG LAGHQTKHRF EESWIKGAHH HKFFCPSADL 60 PLHCRYLGYL MPNPVVIHNQ EHLRHQHLRN PVVQSPQISL SDRRSIFDPL QQSVVSEIPP 120 QPQGHPQHGY LQMLQKHIMN QVNQQRAHQL PHGNKEQIPH VNAHEPITPT LNQNNIYAQH 180 LSQWDQFKIQ VMNGALAAKP LELTHSSIGS TSEVTTGWMC EKKNEDHEVE ELDLELRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g095270.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3Q7FP26	1e-178	A0A3Q7FP26_SOLLC; Uncharacterized protein
STRING	Solyc03g095270.1.1	1e-178	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6643	8	21

Link Out ? help Back to Top
Phytozome	Solyc03g095270.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]