PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g095940.1.1

Common Name

LOC101259032

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 171aa MW: 19226.7 Da PI: 6.7458

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g095940.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.5	1.7e-41	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+l+r+C++ C +apyf +++pkkfanvhk+FGasnv+k+l+++p+++red+++slvyeAe+r+rdPvyG++g i +lq+++ +l+ Solyc03g095940.1.1 11 SCAACKFLKRRCTTTCQFAPYFRSDEPKKFANVHKVFGASNVIKILNEVPQDQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRKMVELQ 101 6**************************************************************************************** PP DUF260 92 aelallkee 100 ++l ++k++ Solyc03g095940.1.1 102 HDLMVTKAH 110 9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.114	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.2E-41	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MKNNEPRSSS SCAACKFLKR RCTTTCQFAP YFRSDEPKKF ANVHKVFGAS NVIKILNEVP 60 QDQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQRKMVEL QHDLMVTKAH LAYYETKPST 120 TTSNCSLLDY DPNPSFYVDT SAGFMDTFTQ NTFAMDQTGS NNEFAQFPFP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-45	6	114	6	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-45	6	114	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g095940.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004235237.1	1e-126	LOB domain-containing protein 21
Swissprot	Q9SRL8	8e-59	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A3Q7FPI4	1e-125	A0A3Q7FPI4_SOLLC; Uncharacterized protein
STRING	Solyc03g095940.1.1	1e-126	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	3e-61	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Solyc03g095940.1.1
Entrez Gene	101259032

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]