PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g095980.2.1

Common Name

LOC101256462

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 210aa MW: 23867.1 Da PI: 6.8937

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g095980.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.3e-14	34	80	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRRdriN +++Lr+l+P+ K++Ka+ L +v+++k+L Solyc03g095980.2.1 34 RSHSEAEKRRRDRINAQLSTLRKLIPTwE------KMDKAALLGSVVDHVKDL 80 78***********************55......**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.24E-10	29	83	No hit	No description
PROSITE profile	PS50888	16.126	31	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-14	33	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-11	34	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-15	34	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-12	37	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	8.24E-5	119	185	No hit	No description
Gene3D	G3DSA:3.30.70.260	5.8E-5	119	183	No hit	No description
CDD	cd04873	2.03E-6	119	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MENSFSSEYC DVNDFLVQNY LPQCSHEGRE SASRSHSEAE KRRRDRINAQ LSTLRKLIPT 60 WEKMDKAALL GSVVDHVKDL KDKTAEISNV LNTPTDTDEV SIEHLNEEED NKGCLIKASF 120 CCDDRPELFS ELQRGIKNLQ LRMMEADITS LGGRIKCVFM LSPNDNYVCI NSLEKSLKAV 180 LSRIAISPST SNYRIKSKRQ RFFLPPQFS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	200	KSKRQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g095980.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC158310	5e-09	Solanum lycopersicum AFLP fragment TGT3, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004235454.1	1e-155	transcription factor bHLH51
TrEMBL	A0A3Q7GBV5	1e-153	A0A3Q7GBV5_SOLLC; Uncharacterized protein
STRING	Solyc03g095980.2.1	1e-154	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5820	22	35
Representative plant	OGRP377	15	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc03g095980.2.1
Entrez Gene	101256462

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]