PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g098060.1.1
Common NameLOC101250097
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 180aa    MW: 19951.9 Da    PI: 8.2899
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g098060.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.82.6e-28862456
         ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee..gtaaalkCaACgCHRnFHRre 56
                          Y+eCl+NhAaslG++a+DGCgEf+ +++++  g +++l+CaACgCHRnFHR+ 
  Solyc03g098060.1.1  8 DIYRECLRNHAASLGSYATDGCGEFTLDDTNTspGGSTSLNCAACGCHRNFHRKF 62
                        57************************99766656779****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-23961IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.8851062IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-231061IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-171061IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.4E-2891162IPR009057Homeodomain-like
SuperFamilySSF466891.45E-1693160IPR009057Homeodomain-like
TIGRFAMsTIGR015655.7E-27102160IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQGDKSNDIY RECLRNHAAS LGSYATDGCG EFTLDDTNTS PGGSTSLNCA ACGCHRNFHR  60
KFSCGGSYSN NSSRDDREII AAHDYRLATT EESPAVSERS GKKRFRTKFT GDQKEKMLAF  120
AEKLGWTLQR KDEENETERF CREIGVSRKV FKVWMHNHKN NSSSVSSTVT GNNASSLTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211031641878ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g098060.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235372.11e-132zinc-finger homeodomain protein 9-like
TrEMBLM1D7H01e-129M1D7H0_SOLTU; Uncharacterized protein
STRINGSolyc03g098060.1.11e-132(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118652023
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.26e-40homeobox protein 31
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]