PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g114220.1.1
Common NameLOC104646647
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 243aa    MW: 28136.4 Da    PI: 4.8783
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g114220.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.21.6e-10128943128
                 NAM  43 ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          Pw++   ++ eek  yf ++ +k++++ +r +r+ ++g+W+ +  +++       +vg k+ L f   ++++g++ +W+m ey++
  Solyc03g114220.1.1  12 PPWEIF-GANYEEKFRYFITPLKKQKTEYTRFSRICAKGTWQGQTGNRTA-----PVVGFKRNLKFK--TSERGQNNTWLMVEYHV 89 
                         689996.555567788*************************955554444.....459********8..789999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.0041113IPR003441NAC domain
SuperFamilySSF1019415.49E-1411112IPR003441NAC domain
PfamPF023652.0E-71289IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MNYVLSIYED QPPWEIFGAN YEEKFRYFIT PLKKQKTEYT RFSRICAKGT WQGQTGNRTA  60
PVVGFKRNLK FKTSERGQNN TWLMVEYHVA DSFFKENNHI PKEDFVVCRI KKNKKGKEKN  120
VDHVMEAQDG DVVGIIDPML LEPNHNNDYS TREDQVRVCD AVEATTTEFD IQNSTYEATT  180
TEKKETALEV QEGHGVDDIR SNELQEEMYR AFDDIPFELV VEFTRSTTYI IHINSSLDGL  240
CS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g114220.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886102.10.0uncharacterized protein LOC104646647
TrEMBLA0A3Q7FSG00.0A0A3Q7FSG0_SOLLC; Uncharacterized protein
STRINGSolyc03g114220.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.18e-11NAC family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]