PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g114440.1.1
Common NameLOC101245636
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 180aa    MW: 20349 Da    PI: 9.8698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g114440.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.2e-163281255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +grWvAeI+  s   ++ r +lg+f+ aeeAa a++ a++ l+g
  Solyc03g114440.1.1 32 RFIGVRQRP-SGRWVAEIKQTS---QKLRLWLGTFDKAEEAAMAYDSAARLLRG 81
                        689******.7******99932...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.13E-303191No hitNo description
PfamPF008472.4E-113281IPR001471AP2/ERF domain
SMARTSM003801.8E-303295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-273289IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-193289IPR016177DNA-binding domain
PROSITE profilePS5103219.0323289IPR001471AP2/ERF domain
PRINTSPR003675.8E-73344IPR001471AP2/ERF domain
PRINTSPR003675.8E-75571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MENSQSPSKS LNNSSKNIQQ KINPISSNDG KRFIGVRQRP SGRWVAEIKQ TSQKLRLWLG  60
TFDKAEEAAM AYDSAARLLR GKNAKTNFNN HGIFKPNEEN YSLLEKNPRL YQLMKHAIMK  120
KFAGKYQNNE CLETEEVVLV EESINKEEIC AIQLQGSSKV YSSVIVAPSF SNNEKSYQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g114440.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153606e-14Solanum lycopersicum chromosome 2 clone C02HBa0025N15, complete sequence
GenBankAC2154146e-14Solanum lycopersicum chromosome 2 clone C02HBa0190N21, complete sequence
GenBankAC2154336e-14Solanum lycopersicum chromosome 2 clone C02HBa0280E02, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236505.11e-130ethylene-responsive transcription factor ERF071-like
TrEMBLA0A3Q7FSJ61e-129A0A3Q7FSJ6_SOLLC; Uncharacterized protein
STRINGSolyc03g114440.1.11e-129(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-20related to AP2 11
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]