PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g115910.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 418aa MW: 47275.1 Da PI: 5.8215

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g115910.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.1	3.5e-21	53	97	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrq t++kRr gilKKA+E+SvLCd+++ +++fs+tgk Solyc03g115910.1.1 53 KRLESHSNRQSTYCKRRCGILKKAQEISVLCDIDIILLLFSPTGK 97 689****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.156	45	105	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-23	45	104	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.89E-22	46	132	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-16	47	67	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-17	55	100	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-16	67	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-16	82	103	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MASFACVFCP LEFHISEPLP AFKLGSCPTS NPKFQSAPIC FFHRMGRVRL SVKRLESHSN 60 RQSTYCKRRC GILKKAQEIS VLCDIDIILL LFSPTGKPTL FQGGQSNFDE IIAKFAQLTP 120 QERAKRKLES LEVSLIFITT MCSPLAMLCC YFIIQVKVIT MLMVTLQTLR KTFKKLDNDI 180 GVPEFLDASD PSVEELHSQV KLLQSRLTDV EMRLNWWSNP DNINKVEDFA LMECALRESL 240 NAVHVRKLQK TTHLHLLMNS ELDGNTHQWH PENKILRMPF PQTPNILPQE NMGYFGDNSV 300 AESSHVQGSG EVDQARQDTT AMLDNGVLND LTSIACLRQQ LSEQYSYNPN EDLDLLERNM 360 LDPQSDANLK GYLMDYAFQR NFNLTRSVDS VNYSAVDAVA VPDFDEKSYA QPATSSD*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MASFACVFCP LEFHISEPLP AFKLGSCPTS NPKFQSAPIC FFHRMGRVRL SVKRLESHSN  60
RQSTYCKRRC GILKKAQEIS VLCDIDIILL LFSPTGKPTL FQGGQSNFDE IIAKFAQLTP  120
QERAKRKLES LEVSLIFITT MCSPLAMLCC YFIIQVKVIT MLMVTLQTLR KTFKKLDNDI  180
GVPEFLDASD PSVEELHSQV KLLQSRLTDV EMRLNWWSNP DNINKVEDFA LMECALRESL  240
NAVHVRKLQK TTHLHLLMNS ELDGNTHQWH PENKILRMPF PQTPNILPQE NMGYFGDNSV  300
AESSHVQGSG EVDQARQDTT AMLDNGVLND LTSIACLRQQ LSEQYSYNPN EDLDLLERNM  360
LDPQSDANLK GYLMDYAFQR NFNLTRSVDS VNYSAVDAVA VPDFDEKSYA QPATSSD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	4e-13	45	132	1	86	MEF2 CHIMERA
6byy_B	4e-13	45	132	1	86	MEF2 CHIMERA
6byy_C	4e-13	45	132	1	86	MEF2 CHIMERA
6byy_D	4e-13	45	132	1	86	MEF2 CHIMERA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g115910.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246831	2e-22	Solanum lycopersicum strain Heinz 1706 chromosome 3 clone slm-46a13 map 3, complete sequence
GenBank	AC246833	2e-22	Solanum lycopersicum strain Heinz 1706 chromosome 3 clone slm-19f11 map 3, complete sequence
GenBank	AC246837	2e-22	Solanum lycopersicum strain Heinz 1706 chromosome 3 clone slm-14p10 map 3, complete sequence
GenBank	AC246896	2e-22	Solanum lycopersicum strain Heinz 1706 chromosome 3 clone slm-9h14 map 3, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019068634.1	0.0	agamous-like MADS-box protein AGL65 isoform X2
TrEMBL	A0A3Q7FR61	0.0	A0A3Q7FR61_SOLLC; Uncharacterized protein
STRING	Solyc03g115910.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7640	21	24
Representative plant	OGRP5946	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	5e-56	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Solyc03g115910.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]