PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g116010.1.1

Common Name

LOC101259929

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 312aa MW: 36029.8 Da PI: 4.6032

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g116010.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.4	7.9e-25	144	192	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s + +skyF++pi+ AAkeL+++lT+LK++CR +GI+RWPhRk+ sl Solyc03g116010.1.1 144 MLSRDAISKYFYMPITRAAKELNIGLTLLKKRCRDLGIRRWPHRKLMSL 192 588999****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.915	127	213	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-20	145	192	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MGSDQSNFEF IMTKQDNHQD LLSLPPQLPS LDDFSEFSGH YAIDYQYDLS IQENTNPLME 60 MECTLEDPFY SSFYSLTPGE LCYDEIGNEV RMLNEMSGEL IGNGHQQVLL CDNINQQEIV 120 GNEEIIVTEK EKDNIREEIN SSRMLSRDAI SKYFYMPITR AAKELNIGLT LLKKRCRDLG 180 IRRWPHRKLM SLQTLIKNVK ELEKVGGNGM EEKLKDVIKL LEKEKKKMEE IPDMELEEKT 240 KRLRQACFKA NYKRRRLLCM PELHASFGSY CSTTPSLDDN VAIGDQHEED DEEIKSLLAD 300 CFSYNSPTLH D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	252	256	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g116010.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019068278.2	1e-171	protein RKD2
TrEMBL	A0A3Q7FR77	0.0	A0A3Q7FR77_SOLLC; Uncharacterized protein
STRING	Solyc03g116010.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-40	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Solyc03g116010.1.1
Entrez Gene	101259929

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]