PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g116410.1.1
Common NameLOC101257553
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 178aa    MW: 19517.6 Da    PI: 8.9843
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g116410.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.3e-09729325
                        S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                        +++C +f+r G C+yG+rC++ H
  Solyc03g116410.1.1  7 RPICTRFQRWGNCSYGERCRYVH 29
                        799******************** PP
2zf-CCCH35.31.9e-1193118227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+lC+ + r G C +G+rC+FaHg+
  Solyc03g116410.1.1  93 KTRLCNSWERDGSCFFGARCQFAHGR 118
                         9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.54432IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-4531IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6729IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6831IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-6930IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-990122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-1491122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.97191119IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-591118IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-893118IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAQEGNRPIC TRFQRWGNCS YGERCRYVHT AGGSTYGPLQ GGGYDQSYVE EGKSAYRESA  60
AITIVSGGNE VKNKSYSDNV EPKSSVDFRT RMKTRLCNSW ERDGSCFFGA RCQFAHGRAE  120
LQGYGSSNPL VSSSNAGISA PAKKVAPNEV GSSAPAERRF KWNDVRKISQ VYGDWIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g116410.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1247420.0Solanum lycopersicum chromosome 3 clone C03HBa0323D22, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068280.11e-130zinc finger CCCH domain-containing protein 12-like isoform X1
TrEMBLA0A3Q7FUD91e-130A0A3Q7FUD9_SOLLC; Uncharacterized protein
STRINGSolyc03g116410.1.11e-129(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Representative plantOGRP10392510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-17C3H family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]