PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g117230.1.1
Common NameLOC101253369
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 253aa    MW: 28405.4 Da    PI: 10.2233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g117230.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19120169255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +grW AeIrd       r r++lg+f+t+eeAa+a++aa++ l+g
  Solyc03g117230.1.1 120 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEEAARAYDAAARWLRG 169
                         69*******.**********32....25**********************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.86E-20119178No hitNo description
PROSITE profilePS5103222.062120177IPR001471AP2/ERF domain
PfamPF008472.1E-13120169IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21120178IPR016177DNA-binding domain
SMARTSM003802.8E-31120183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-29120177IPR001471AP2/ERF domain
PRINTSPR003672.8E-10121132IPR001471AP2/ERF domain
PRINTSPR003672.8E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MYNSLSQKAE PFFFSTQNPL YPNEPNRHHN FSIDNTNYSL DPFWDNYSVS ANENFNEKSP  60
VLEGIAAVVG EHVLFGHSNN NNNNQNKNDD PNSSAISILK RTCPEEKKKN NNNVQSVEKS  120
YRGVRKRPWG RWSAEIRDRI GRCRHWLGTF DTPEEAARAY DAAARWLRGS KARTNFQIPP  180
IVPLPTSPTS TSSSSNSSRE MKKKNKNGGS IANNQRKCSV VTSAAHLFSS NELSKGVSVT  240
VELDLNLGFR RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-16109176371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g117230.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236454.10.0ethylene-responsive transcription factor ERF084
TrEMBLA0A3Q7GHY90.0A0A3Q7GHY9_SOLLC; Uncharacterized protein
STRINGSolyc03g117230.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115522225
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-25ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]