PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g119530.2.1
Common NameLOC101257056
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 248aa    MW: 26951.6 Da    PI: 6.866
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g119530.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.41.1e-284107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C + p++     p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +P+yG++g+++++++ 
  Solyc03g119530.2.1   4 SCNGCRVLRKGCNEKCSIKPCLqwiqsPEAQSNATLFLAKFYGRAGLLNLINSGPDHLRPAIFRSLLYEACGRIVNPIYGSTGLLTSGNWP 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         l+q+++e++l ++
  Solyc03g119530.2.1  95 LCQAAVEAVLNGA 107
                         *******998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2283109IPR004883Lateral organ boundaries, LOB
PfamPF031959.6E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCNEKCS IKPCLQWIQS PEAQSNATLF LAKFYGRAGL LNLINSGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWPLCQAAV EAVLNGAPIV KLSPDSAADA  120
TSPPLKACDI RHVSRENISD PDLHKVKSRT RFKRVSAKPE PRKQSPDVDD AARVMWSWCH  180
KEEEEAVGSP SLNSGLSQQR TEEPSRDGES GDVDSGSVET VEALPAKLDE SDVCLELTLG  240
WLPLIRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.50670.0callus| cell culture| fruit| root| trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g119530.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132140.0Lycopersicon esculentum clone 134425F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235815.10.0LOB domain-containing protein 40
SwissprotQ9M8867e-77LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A3Q7FWA61e-180A0A3Q7FWA6_SOLLC; Uncharacterized protein
STRINGSolyc03g119530.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-79LOB domain-containing protein 41
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]