PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g119680.1.1
Common NameLOC101265120
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20293.2 Da    PI: 7.2605
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g119680.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.21e-081561147
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                        k ie++  r+v+fskR+ +++         ++a+v v++fs++gk y
  Solyc03g119680.1.1 15 KLIESEKARTVSFSKRKRTLFQDVDKFAAQTGADVGVMLFSPSGKPY 61
                        569*****************************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.105767IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-12766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-18887IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-5929IPR002100Transcription factor, MADS-box
PfamPF003191.3E-141762IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-54465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MENETKKGKQ KIEMKLIESE KARTVSFSKR KRTLFQDVDK FAAQTGADVG VMLFSPSGKP  60
YSHGSTSIEE IIDQYLKVKL EDHQRDHAEG KMNGFEVLGA LHKELQAWNE KEKNRKLMYK  120
IMHSGSEAPP DKHMEEQKLA LKLRVEKIKK ETQAAILVEH LKFDLNVAPE PEEDESS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g119680.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771453.11e-124MADS-box transcription factor 23-like
TrEMBLA0A3Q7I4P32e-89A0A3Q7I4P3_SOLLC; Uncharacterized protein
STRINGSolyc03g119680.1.11e-127(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-16AGAMOUS-like 61
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]