PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g119740.2.1
Common NameLOC101260117
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 300aa    MW: 32825.5 Da    PI: 7.1263
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g119740.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-081260348
                        SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48
                         W+ eE++ + +a++q+  +    +W+  a++++ ++t  ++k+++q +l
  Solyc03g119740.2.1 12 VWSREEEKAFENAIAQHWVEdseqQWEQFASMVP-TKTIDELKEHYQLLL 60
                        6*****************99**************.************875 PP
2Myb_DNA-binding38.92e-12137181347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Solyc03g119740.2.1 137 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 181
                         7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.056864IPR017884SANT domain
SMARTSM007175.1E-4962IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-41060IPR009057Homeodomain-like
PfamPF002491.2E-51259IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-71366IPR009057Homeodomain-like
CDDcd001672.03E-41660No hitNo description
PROSITE profilePS5129416.873130186IPR017930Myb domain
SuperFamilySSF466897.18E-17132187IPR009057Homeodomain-like
SMARTSM007172.3E-10134184IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.1E-17134184IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.4E-11135180IPR009057Homeodomain-like
CDDcd001671.00E-9137182No hitNo description
PfamPF002497.3E-11137181IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSPSDSSSSS VVWSREEEKA FENAIAQHWV EDSEQQWEQF ASMVPTKTID ELKEHYQLLL  60
EDVAAIEAGQ VPIPNYKGEE ASSSSTKEVN LGYPGSVDGR RSNCGYANGF SGTNHDPIGH  120
GGKGNSRSEQ ERRKGIPWTE EEHRLFLLGL DKFGKGDWRS ISRNFVISRT PTQVASHAQK  180
YFIRLNSMNR DRRRSSIHDI TSINNGGDVS THQAPITGQQ VNPNPSNPAA LGPSVKHRTQ  240
PNMHSMGMYG APMGHPVAAP PSHLASAVGT PVMLPHGHHP PYVLPLAYPI PPPPPPMHQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.99820.0fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aboveground tissues, with the highest level in leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g119740.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235740.10.0transcription factor MYBS1
SwissprotB8A9B22e-83MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH592e-83MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A3Q7GJT70.0A0A3Q7GJT7_SOLLC; Uncharacterized protein
STRINGSolyc03g119740.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58012136
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.13e-78MYB family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]