PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g120530.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 293aa    MW: 32236.6 Da    PI: 7.1298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g120530.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000171882261255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Solyc03g120530.2.1 188 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 226
                         6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.46E-7172230No hitNo description
PROSITE profilePS5088811.566176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-8186234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-11186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MHPHESHELS SSTTTTQHFY GSSNFLADNN PSQDHLPRSW SQLLLSGLSC DQEKPDISDH  60
FQHQYKKLEN WEEIQNLNSI HNNNIIPSNS SFRVPIFDVK PEELVSQRLY SNYHHDLSPA  120
SSCVTTNLNH NNIFNFSSSP ANKITNSNKV VEVKHQDHSS ECNSTSNGGV TKKARVQHSS  180
AQPSLKVRKE KLGDRITALH QLVSPFGKTD TASVLSEAIG YIRFLQAQIQ ALSSPYMGNV  240
AGSMGHTQQQ SADLRSRGLC LVPISCTQHV GSDNNNTVGD YWAPALGGGG YL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.152710.0callus| cell culture| fruit| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g120530.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2181442e-15Solanum lycopersicum chromosome 12 clone LE_HBa-81D6, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235685.10.0transcription factor bHLH68
TrEMBLM0ZRY80.0M0ZRY8_SOLTU; Uncharacterized protein
STRINGSolyc03g120530.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Representative plantOGRP3780714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-49bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]