PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g121940.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YA

Protein Properties

Length: 242aa MW: 27184.5 Da PI: 9.3924

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g121940.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.2	2.4e-32	88	144	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQyq+Il+RRq Ra+le+++kl +k+rkpylheSRh+hAl+R+Rg+gGrF Solyc03g121940.2.1 88 DEPIFVNAKQYQAILRRRQYRARLEAQNKL-SKGRKPYLHESRHRHALNRARGPGGRF 144 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-33	86	147	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.838	87	147	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.5E-27	89	144	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.3E-22	90	112	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.3E-22	121	144	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MVKTIFLCEQ IGSVRSSGKS DDSQSVSSQE HGWTFDTYQT NFAVVPFPHP DPYYHDLVAA 60 YGNPTLVQSQ MLGTVAPRVP LPLDLKQDEP IFVNAKQYQA ILRRRQYRAR LEAQNKLSKG 120 RKPYLHESRH RHALNRARGP GGRFVNMKKP GESKSPDLIN GQDNQIPDEL QLNTKMLERD 180 VDQSGSHSTP FYSAITSGSK GDAIYHHQLF NYSAFSAHNV GVSQLDKEKK DNMSYPCLSS 240 F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-21	88	158	2	69	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.23481	0.0	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g121940.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU928192	0.0	S.lycopersicum DNA sequence from clone LE_HBa-142A5, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004235574.1	1e-173	nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_010318489.1	1e-173	nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_025886015.1	1e-173	nuclear transcription factor Y subunit A-3 isoform X2
TrEMBL	A0A3Q7FUC8	1e-164	A0A3Q7FUC8_SOLLC; Uncharacterized protein
STRING	Solyc03g121940.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13966	11	14
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	5e-42	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Solyc03g121940.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]