PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g005130.2.1

Common Name

LOC101257162

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 228aa MW: 25026.8 Da PI: 6.97

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g005130.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	3.9e-10	110	157	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Solyc04g005130.2.1 110 SHSLAERARREKISDRMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 157 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.03E-10	104	161	No hit	No description
SuperFamily	SSF47459	2.09E-17	104	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.9E-18	106	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.421	106	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-7	110	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.0E-10	112	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MDPHSTIMSA FQTATNLAEI WPYHHLLDHT TNHAATKRRD DDESAIAVST SGNALTESDS 60 KRLKATRSNE NGEYSGGNSG KSSDQPAKPP AEPPKDYIHV RARRGQATDS HSLAERARRE 120 KISDRMKILQ DLVPGCNKVI GKALVLDEII NYVQSLQRQV EFLSMKLEAV NTRVTPTIEG 180 IPTKDFGQQT FETNAMAFGS QGTREYAGGT SPDWLHMQIG GGFERTT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g005130.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004237071.1	1e-171	transcription factor BHLH089-like isoform X2
Swissprot	Q69WS3	2e-74	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	A0A3Q7FY75	1e-170	A0A3Q7FY75_SOLLC; Uncharacterized protein
STRING	Solyc04g005130.2.1	1e-171	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	2e-82	BIG PETAL P

Link Out ? help Back to Top
Phytozome	Solyc04g005130.2.1
Entrez Gene	101257162

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]