PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g005170.1.1

Common Name

LOC101255785

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 192aa MW: 22298.6 Da PI: 6.363

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g005170.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.1	4.5e-14	81	140	5	64
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 +++rr+++NRe+ArrsR RK+ ++eL v L +eN L+++l++ ++ +k+ +e++ Solyc04g005170.1.1 81 RKQRRMISNRESARRSRMRKQRHLDELWSQVVRLRTENNNLINKLNQVSESHEKVVQENM 140 79**************************************************99999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.6E-16	77	141	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.266	79	142	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.45E-12	81	131	No hit	No description
Pfam	PF00170	7.3E-12	81	140	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.4E-11	81	134	No hit	No description
CDD	cd14702	7.36E-19	82	132	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MISSEAATIH YLAQENPSSL PIDYTFTHKN FQFNNTFLTN NYQSFTFPIQ DLISTQPASC 60 ISSNSTSDES EEQQHRIIDE RKQRRMISNR ESARRSRMRK QRHLDELWSQ VVRLRTENNN 120 LINKLNQVSE SHEKVVQENM QLKDEAYDLR RLLVDIQVAT PFNGFSNIDD NVPSSLKTES 180 SNQSTTERKL E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	100	RRSRMRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.23133	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g005170.1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004237067.1	1e-139	basic leucine zipper 43
TrEMBL	A0A3Q7FUZ0	1e-137	A0A3Q7FUZ0_SOLLC; Uncharacterized protein
STRING	Solyc04g005170.1.1	1e-138	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA947	24	92
Representative plant	OGRP3104	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	2e-47	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Solyc04g005170.1.1
Entrez Gene	101255785

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]