PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g007430.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 185aa MW: 20674 Da PI: 9.7113

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g007430.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.8e-12	41	87	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++ErrRR +i +++ L +l+P++ K + a++L +A+++I+ Lq Solyc04g007430.1.1 41 MHKMNERRRRYKIAKKMKVLETLIPNC-----NKSDRASVLDQAIQHIQALQ 87 7***********************8.....699**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.08E-11	35	91	No hit	No description
SuperFamily	SSF47459	1.57E-15	36	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.449	37	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-15	41	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-9	41	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-11	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MLARFGVCYV AEIETNNGSG ITSRRNEDGL YQYPKASCVE MHKMNERRRR YKIAKKMKVL 60 ETLIPNCNKS DRASVLDQAI QHIQALQHQI QVMSMDRIRG STLVAAGRNQ IMQSTLHFNP 120 YIGAIGYFFN FSNILCSNFS PMLSTGSEFP FLPLAVACNL LHPGPIMEVF TRGSASVAPL 180 EKRV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	50	ERRRRY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g007430.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015170292.1	1e-111	PREDICTED: transcription factor PIF5-like isoform X4
TrEMBL	M1A5X8	1e-110	M1A5X8_SOLTU; Uncharacterized protein
STRING	Solyc04g007430.1.1	1e-136	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15248	8	8
Representative plant	OGRP258	16	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-12	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Solyc04g007430.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]