PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g008380.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family BBR-BPC
Protein Properties Length: 292aa    MW: 32234.1 Da    PI: 10.0524
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g008380.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind329.68.8e-10122749301
           GAGA_bind   9 rnkgyyepaaslkenlglqlmssiaerdaki...rernlalsekkaavaerd..........maflqrdkalaernkalverdnkllalll 86 
                         rn+gyyep+  lk +lglqlmss+ +rdak+   r +n  + + ++++++rd          +++  rd+++++        ++k+l++ +
  Solyc04g008380.2.1   2 RNWGYYEPS--LKGHLGLQLMSSMVDRDAKPyltRRENPIMLGANGVFHSRDsiipeaplshIDY-VRDSWINH--------RDKFLHMFP 81 
                         9******99..**********************9777888*******************999999.99****99........789999999 PP

           GAGA_bind  87 venslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
                                  +++++vl++++    +q++++p+++++             + +e+++++ke+  +k++  +++pk++kakk kk s+++k++
  Solyc04g008380.2.1  82 G--------SPYTSVLPDASASTPMQMVQQPDTTKDV----------GVN-VEEPSVKKESGPSKRKTGGATPKAPKAKKSKKVSSAPKEN 153
                         3........4678899999999999994443332221..........122.334566677777777788899***********99999777 PP

           GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268
                          ++++   r+k  kks+d+vlng+++D+s +P+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+
  Solyc04g008380.2.1 154 GNPSQ---RAKPAKKSMDIVLNGIDMDISVIPIPVCSCTGSPQQCYRWGCGGWQSACCTTSISMYPLPMSTKRRGARIAGRKMSQGAFKKV 241
                         77666...89********************************************************************************* PP

           GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                         LekLaaeGy+++np+DL++hWAkHGtnkfvtir
  Solyc04g008380.2.1 242 LEKLAAEGYNFANPIDLRTHWAKHGTNKFVTIR 274
                         ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.9E-1571274IPR010409GAGA-binding transcriptional activator
PfamPF062173.0E-1121274IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MRNWGYYEPS LKGHLGLQLM SSMVDRDAKP YLTRRENPIM LGANGVFHSR DSIIPEAPLS  60
HIDYVRDSWI NHRDKFLHMF PGSPYTSVLP DASASTPMQM VQQPDTTKDV GVNVEEPSVK  120
KESGPSKRKT GGATPKAPKA KKSKKVSSAP KENGNPSQRA KPAKKSMDIV LNGIDMDISV  180
IPIPVCSCTG SPQQCYRWGC GGWQSACCTT SISMYPLPMS TKRRGARIAG RKMSQGAFKK  240
VLEKLAAEGY NFANPIDLRT HWAKHGTNKF VTIRLCDLCE GHIDSHKIYQ I*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.13040.0callus| floral bud| flower| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g008380.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823030.0Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266117.10.0GAGA-binding transcriptional activator
RefseqXP_015073770.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD01e-103BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLH1ZN860.0H1ZN86_SOLLC; GAGA-binding transcriptional activator
STRINGSolyc04g008380.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90612429
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.21e-98basic pentacysteine1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]