PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g009180.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 267aa MW: 27727.2 Da PI: 10.3875

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g009180.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.1	1.3e-37	32	121	2	92
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s++ s ++ Solyc04g009180.1.1 32 TVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSVRNSTA--SLVSSL 120 689******************************************************************87732222222222..222222 PP TCP 92 k 92 + Solyc04g009180.1.1 121 S 121 2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.613	38	92	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.6E-34	39	129	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MSTSAEGNGA IIDPQRQQQQ APTGVGTNGA LTVKKPPVKD RHSKVDGRGR RIRMPIVCAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTIPA SFSTVSVSVR NSTASLVSSL 120 SAPLDQKSSQ MISPAPFILG KRLRSDDENI ENGNKDDVAV AAGAATAVGP TAGFWAVPAR 180 PDFGQIWSFA AAPPPEMMVP TSAAAAAAAA AALSSQSSRF FQQQMGEASA ARVGNYLPMT 240 QGHLNLLASL SGPPQPSSGR RDDDGR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.1074	0.0	leaf

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g009180.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Interaction ? help Back to Top
Source	Intact With
BioGRID	Solyc03g006800.1, Solyc08g080150.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF411807	0.0	Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence
GenBank	CU856252	0.0	S.lycopersicum DNA sequence from clone SL_MboI-127L14 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001293140.1	0.0	TCP transcription factor 14
Swissprot	Q9FMX2	7e-86	TCP7_ARATH; Transcription factor TCP7
TrEMBL	G3BGV4	0.0	G3BGV4_SOLLC; TCP transcription factor 14
STRING	Solyc04g009180.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42
Representative plant	OGRP8514	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-84	TCP family protein

Link Out ? help Back to Top
Phytozome	Solyc04g009180.1.1
Entrez Gene	100736457

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Parapunova V, et al. Identification, cloning and characterization of the tomato TCP transcription factor family. BMC Plant Biol., 2014. 14: p. 157 [PMID:24903607]