PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g011630.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 171aa MW: 20017.2 Da PI: 9.5974

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g011630.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	149.5	3.1e-46	3	167	209	374
GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 + +llde+v ++s+rd vL+l+++l+P+v + + +n++ F +rf eal +ys++fd+lea++pre er vE+ ++gre++nvva Solyc04g011630.1.1 3 RFRNLLDETVVVNSPRDIVLNLIRKLNPDVYIQGIVNGAYNAPFFITRFREALFHYSSVFDMLEANIPREIPERLLVEKLIFGREAMNVVA 93 677899*********************************************************************************** PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ce aer+er et+++W+ r ++aGF+++pl+e++ ak ++ +++d + ++ + ++l++gWk+r ++++S W+ Solyc04g011630.1.1 94 CEAAERIERPETYKQWQVRNTRAGFRQLPLNEEILRMAKDRVKAYHKD-FVIDVDGHWLLQGWKGRIMYAASTWK 167 ******************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	25.795	1	148	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-43	3	167	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MYRFRNLLDE TVVVNSPRDI VLNLIRKLNP DVYIQGIVNG AYNAPFFITR FREALFHYSS 60 VFDMLEANIP REIPERLLVE KLIFGREAMN VVACEAAERI ERPETYKQWQ VRNTRAGFRQ 120 LPLNEEILRM AKDRVKAYHK DFVIDVDGHW LLQGWKGRIM YAASTWKAAL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-12	21	167	225	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g011630.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004236732.1	1e-119	scarecrow-like protein 14
Swissprot	P0C883	2e-75	SCL33_ARATH; Scarecrow-like protein 33
TrEMBL	A0A3Q7G0P3	1e-118	A0A3Q7G0P3_SOLLC; Uncharacterized protein
STRING	Solyc04g011630.1.1	1e-123	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17486	4	4
Representative plant	OGRP18124	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-77	GRAS family protein

Link Out ? help Back to Top
Phytozome	Solyc04g011630.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]