 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Solyc04g014830.1.1 |
| Common Name | LOC101260037 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
GRAS |
| Protein Properties |
Length: 554aa MW: 61845.1 Da PI: 7.5117 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc04g014830.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 421.9 | 5.3e-129 | 174 | 544 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
l+elL++cAeav++ d++ a+ l+ l++++s +g+pmqRl ay++e+L+arl++s+s++yk+l+++e + sse l++++++++++P++
Solyc04g014830.1.1 174 LKELLVACAEAVDEADTSTAEVLMDALEKRVSVYGEPMQRLSAYMLEGLRARLLSSGSNIYKKLKCNEPT---SSELLSYMQVLYHITPYF 261
5799*****************************************************************9...9***************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
kf+++ aN I ea+++e+r+HiiDf+i qG QW+ L++ La Rp+gpp lRiTg+++++s + l+ +gerLa++A+++gvpfef++
Solyc04g014830.1.1 262 KFAYMSANVVISEAMKNENRIHIIDFQIAQGSQWVFLIHYLARRPGGPPFLRITGIDDSQSAhaRGGGLQLVGERLASIAKSCGVPFEFHT 352
**********************************************************9988889999*********************** PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
+a + +++le+Lrv++gE+laVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v +veqe+++n+++Fl rf e+l+y+ a+f+s+
Solyc04g014830.1.1 353 -AALSGCMVKLENLRVRHGESLAVNFPYMLHHMPDESVSTMNHRDRLLRLVKSLSPKIVALVEQEMNTNTAPFLPRFRETLDYHKAIFESV 442
.899*************************************************************************************** PP
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
+++ pr++ +ri E+++++r++vn++acega+r+erhe ++kWr+rl +aGF+p pls ++a+ +k +l++++s+ y++ e++g+l++gW
Solyc04g014830.1.1 443 DVTRPRNDMQRIRSEEHCIARDVVNLIACEGADRVERHEVFGKWRSRLLMAGFTPCPLSPSVAEAIKVMLKEYSSN-YKLAESQGALYIGW 532
**************************************************************************77.************** PP
GRAS 363 kdrpLvsvSaWr 374
++r+L + SaW+
Solyc04g014830.1.1 533 NNRALATSSAWQ 544
***********6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 554 aa
Download sequence Send
to blast |
MQASQGPQRS CSVHKLYNKP MQQVQQNYTP CRASDNSNYN DGSNSQAQVS LTTENEKFFT 60
VDTFPATDCA IYDGDPSVSV SSNRSPFSSQ CSQSNMFEQR RSYEKTAGSP VSLCSGVDDS 120
NGKKHELREL NNKLLRPESD IDDSCSCSLN GVVSKHFSLT RRNQVLDVAS RLDLKELLVA 180
CAEAVDEADT STAEVLMDAL EKRVSVYGEP MQRLSAYMLE GLRARLLSSG SNIYKKLKCN 240
EPTSSELLSY MQVLYHITPY FKFAYMSANV VISEAMKNEN RIHIIDFQIA QGSQWVFLIH 300
YLARRPGGPP FLRITGIDDS QSAHARGGGL QLVGERLASI AKSCGVPFEF HTAALSGCMV 360
KLENLRVRHG ESLAVNFPYM LHHMPDESVS TMNHRDRLLR LVKSLSPKIV ALVEQEMNTN 420
TAPFLPRFRE TLDYHKAIFE SVDVTRPRND MQRIRSEEHC IARDVVNLIA CEGADRVERH 480
EVFGKWRSRL LMAGFTPCPL SPSVAEAIKV MLKEYSSNYK LAESQGALYI GWNNRALATS 540
SAWQLPHSLP LGS*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
