PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g015500.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 218aa    MW: 24593.1 Da    PI: 5.0008
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g015500.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.63.1e-1544132198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk+ ++++++k++   +p +f++ehg +   +  + le ++g +W+v+l   ++sg+++l +GW++F +   +  g f++F+++g+s+f 
  Solyc04g015500.2.1  44 FFKIILSPHASKLH---IPDEFVTEHGAN--LGDIVLLEVPNGVVWKVRL--LNSSGMVWLNEGWNKFKEYYSIGCGYFLLFRYKGNSQF- 126
                         78888788877766...*********977..776888999**********..**********************************9999. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v +f+
  Solyc04g015500.2.1 127 -CVFIFD 132
                         .777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2238134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-2440141IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.37941134IPR003340B3 DNA binding domain
CDDcd100178.77E-2042132No hitNo description
PfamPF023626.9E-1344132IPR003340B3 DNA binding domain
SMARTSM010191.8E-1344134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVDRREDHLA ETAARREKQP AGMASRQGQG EPRPVDIPER TPHFFKIILS PHASKLHIPD  60
EFVTEHGANL GDIVLLEVPN GVVWKVRLLN SSGMVWLNEG WNKFKEYYSI GCGYFLLFRY  120
KGNSQFCVFI FDLSASEIEY PPGPNEDMTP ENRSVLCVRL EENGINLPPP GEPPKEKRIN  180
LTPPNDPPEE DVIYLPPPGI YTMEELSLIS MPSRPKV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.179750.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g015500.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2541340.0Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-27o4 map 9, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236625.11e-160B3 domain-containing protein At1g49475 isoform X2
TrEMBLA0A3Q7G0B51e-158A0A3Q7G0B5_SOLLC; Uncharacterized protein
STRINGSolyc04g015500.2.11e-158(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-25B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]