PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g015960.2.1
Common NameLOC101267222
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 283aa    MW: 32588.2 Da    PI: 10.0819
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g015960.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.79.2e-103215616128
                 NAM  16 veyLkkkvegkkleleev.ikevd....iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                         ++yL k v gk+++ e++ i++vd    i  + P ++  ++  +++++ + F+ ++k++  +   ++ t  g+Wk   k k++++++++++
  Solyc04g015960.2.1  32 MNYLVKYVIGKSFPYEHTvIEDVDevygIRLYSPLQILgTTQGTKKNKRFIFTFQNKRNC-KVFISKDTP-GFWKPNPKIKSIFDSNKKHI 120
                         489*********777554488885444466789*99973343445557799999888765.455556555.***************99999 PP

                 NAM 101 glkktLvfy........kgrapkgektdWvmheyrl 128
                         g  k+  +y        ++++++ +k++W + ey l
  Solyc04g015960.2.1 121 GNIKISWYYyydtnngrRKSSKRLKKSEWHIREYYL 156
                         9988877776898866555666778*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.64718179IPR003441NAC domain
SuperFamilySSF1019415.75E-1232176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEVFDLSSME KSGSSKVTDN GGRSKALDKR MMNYLVKYVI GKSFPYEHTV IEDVDEVYGI  60
RLYSPLQILG TTQGTKKNKR FIFTFQNKRN CKVFISKDTP GFWKPNPKIK SIFDSNKKHI  120
GNIKISWYYY YDTNNGRRKS SKRLKKSEWH IREYYLSSKY LPPNKVERKD VILTMMMKTK  180
EQKGGNSNNN NQEKSDKAMQ IIQSQEDGHV QLDHNNGDAV EMSVENQLIM QSLQSLQLSD  240
KAMQIIQSPQ GGQVQLDHKN GDTVGMSVEN QLIMQPLQRL QL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g015960.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236605.10.0uncharacterized protein LOC101267222
TrEMBLA0A3Q7G0G50.0A0A3Q7G0G5_SOLLC; Uncharacterized protein
STRINGSolyc04g015960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14078510
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]