PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g016000.2.1
Common NameLOC101266325
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 238aa    MW: 27566.6 Da    PI: 9.3151
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g016000.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.5e-35291202102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y ++ed+++++l+sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+++++         weF++++Fkkg+k+
  Solyc04g016000.2.1  29 FLLKTYMLVEDPATDDLVSWNSDGSAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKITTSQ---------WEFSNDKFKKGEKN 110
                         9****************************************************************998.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Solyc04g016000.2.1 111 LLREIRRRKA 120
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.94E-3324118IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-3625118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5225118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-182952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGVLEGGQVS DEKSLLEYVV MKKSSPSPFL LKTYMLVEDP ATDDLVSWNS DGSAFVVWQP  60
AEFARDLLPT LFKHSNFSSF VRQLNTYGFR KITTSQWEFS NDKFKKGEKN LLREIRRRKA  120
WTNRQQPNNK KDNIIEEDQR SSSSTSSSSE YINLVDENKR LKMENGVLSS ELLLMKNKCK  180
ELMNIVTIFA KNPEKEEDEK KPMLFGVRLE VKEEMEKKRK RVELNEMASV FLSQLCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-212911820120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g016000.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236602.11e-173heat stress transcription factor B-3
SwissprotO222308e-63HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A3Q7GSI41e-172A0A3Q7GSI4_SOLLC; Uncharacterized protein
STRINGSolyc04g016000.2.11e-172(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-60heat shock transcription factor B3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]