PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g025110.1.1
Common NameLOC101251082
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 131aa    MW: 14313.7 Da    PI: 10.2617
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g025110.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73.1e-181858444
                        -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        +n +n qvtfskR++g+lKKA EL+ LC+a++ ++ fs+++
  Solyc04g025110.1.1 18 KNARNLQVTFSKRLAGLLKKALELCMLCGAKIIIVAFSPSD 58
                        899***********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-16767IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.437757IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-17988IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-10929IPR002100Transcription factor, MADS-box
PfamPF003192.2E-171758IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-102944IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-104465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MATRINKGSQ RVDMVKMKNA RNLQVTFSKR LAGLLKKALE LCMLCGAKII IVAFSPSDNG  60
DFSFGPTSIS PSVERFLGRK FPQPNNDVHN QQIVALIEGG ICELNTKLRN LEGILEMEIN  120
RGPSLGELGR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g025110.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357970.0Solanum lycopersicum chromosome 3 clone C03HBa0065A22, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237288.19e-91agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7G1I32e-89A0A3Q7G1I3_SOLLC; Uncharacterized protein
STRINGSolyc04g025110.1.13e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2749522
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-24AGAMOUS-like 62
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]