PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g025740.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 149aa MW: 17231.9 Da PI: 10.3652

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g025740.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.5	1.7e-11	22	77	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++kR ++t eq+++ +++ +k+++p++++ ++++++gL+ +++k+W N +++ek Solyc04g025740.1.1 22 KKKRFRLTVEQIQQVKDFLKKCPHPDKDQLIQISEEVGLKPKKIKNWIYNNKTQEK 77 79**************************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-13	8	60	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.309	19	79	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.59E-12	20	84	IPR009057	Homeodomain-like
SMART	SM00389	3.4E-7	21	83	IPR001356	Homeobox domain
CDD	cd00086	2.04E-8	22	79	No hit	No description
Pfam	PF00046	5.2E-9	22	77	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.2E-5	61	107	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MTNVGKKHVG ESSTSQNKAN KKKKRFRLTV EQIQQVKDFL KKCPHPDKDQ LIQISEEVGL 60 KPKKIKNWIY NNKTQEKIQV EKSANKTLRT ENEKLRSENM AMKEAMKKII CPQCDSERAS 120 NLENLKAENQ RLTDKILWYS ILLGGENF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g025740.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010930	8e-10	Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0034G06, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027771932.1	1e-102	homeobox-leucine zipper protein ROC8-like
TrEMBL	A0A3Q7G3A0	1e-103	A0A3Q7G3A0_SOLLC; Uncharacterized protein
STRING	Solyc04g025740.1.1	1e-104	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA27516	2	2
Representative plant	OGRP145	15	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	6e-29	homeodomain GLABROUS 11

Link Out ? help Back to Top
Phytozome	Solyc04g025740.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]