PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g025970.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 118aa MW: 13333.4 Da PI: 10.1618

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g025970.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.7	8.1e-10	15	63	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ie k r+ +f kRr + KKA+EL d+++ v i s+tgk y + Solyc04g025970.1.1 15 EKIEKKVARYASFFKRRLCLYKKASELIQERDVDIGVFISSQTGKPYSF 63 579******************************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.563	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.0E-5	7	66	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.75E-14	8	65	No hit	No description
PRINTS	PR00404	1.5E-5	9	29	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-15	10	83	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-13	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-5	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-5	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MEGKKKAGCQ RIPLEKIEKK VARYASFFKR RLCLYKKASE LIQERDVDIG VFISSQTGKP 60 YSFVHQTANV VINHFKSPTT IDLGAQFAGA EARNNVIQMN DMLNDFDARE KVTKNHI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g025970.1.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU927991	0.0	S.lycopersicum DNA sequence from clone LE_HBa-27J19, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015162384.1	1e-45	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	M1DQR0	1e-57	M1DQR0_SOLTU; Uncharacterized protein
STRING	Solyc04g025970.1.1	4e-83	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA20843	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	7e-13	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Solyc04g025970.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]