PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g049740.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 109aa    MW: 12615 Da    PI: 11.0851
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g049740.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-101148139
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                        + rW  e dell ++v+++G ++W++I + ++ gR+ k+
  Solyc04g049740.1.1 11 KRRWNLEADELLQNLVEKHGAKNWSLIGQLIP-GRSKKS 48
                        579*****************************.***985 PP
2Myb_DNA-binding23.81.1e-0752861248
                        HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +++ ++++G+  W+ Ia  +  gRt++  k++w ++l
  Solyc04g049740.1.1 52 IIKSHAKFGNQ-WAMIAILLI-GRTDNAMKNHWSSFL 86
                        677899***99.*********.***********8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.063190IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-10548IPR009057Homeodomain-like
SMARTSM007175.3E-51088IPR001005SANT/Myb domain
SuperFamilySSF466898.03E-171187IPR009057Homeodomain-like
PfamPF002491.7E-81148IPR001005SANT/Myb domain
CDDcd001672.26E-71348No hitNo description
Gene3DG3DSA:1.10.10.601.7E-105187IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MEIMKKKCMI KRRWNLEADE LLQNLVEKHG AKNWSLIGQL IPGRSKKSYD TIIKSHAKFG  60
NQWAMIAILL IGRTDNAMKN HWSSFLKRKR PLMSKDLTFK NPQPPLIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-159892104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-159892104C-Myb DNA-Binding Domain
1msf_C2e-159892104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g049740.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772392.13e-45transcription factor MYB77-like
SwissprotO231602e-26MYB73_ARATH; Transcription factor MYB73
TrEMBLK4BRV01e-73K4BRV0_SOLLC; Uncharacterized protein
STRINGSolyc04g049740.1.12e-74(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2760522
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.15e-29myb domain protein 70
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]