PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g050010.1.1
Common NameLOC101248668
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 166aa    MW: 18812.5 Da    PI: 5.5755
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g050010.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.69.2e-43131121100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++reda++s+vyeA+ar+rdPvyG++++i +lq+q+++l+
  Solyc04g050010.1.1  13 PCAACKILRRRCVEKCVLAPYFPPTHPLKFTIAHRVFGASNIIKMLQELPEDQREDAVNSMVYEANARIRDPVYGCAAIICQLQKQISELQ 103
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         a+l++++ e
  Solyc04g050010.1.1 104 ADLVKAQVE 112
                         ***999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.8612113IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-4313110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEDTSEYSCP HHPCAACKIL RRRCVEKCVL APYFPPTHPL KFTIAHRVFG ASNIIKMLQE  60
LPEDQREDAV NSMVYEANAR IRDPVYGCAA IICQLQKQIS ELQADLVKAQ VEIMNVQIQN  120
TNLVALICTE MTQNQENNDH QQAYGNSNTC LEDNNLYAPW KSLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-411311511113LOB family transfactor Ramosa2.1
5ly0_B4e-411311511113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g050010.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237662.11e-122LOB domain-containing protein 1-like
SwissprotQ9LQR08e-67LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A3Q7G4M51e-121A0A3Q7G4M5_SOLLC; Uncharacterized protein
STRINGSolyc04g050010.1.11e-121(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-69LOB domain-containing protein 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]